A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
AIC | Akaike Information Criterion |
AIC.gls | Akaike Information Criterion |
AIC.lm | Akaike Information Criterion |
AIC.lme | Akaike Information Criterion |
AIC.lmList | Akaike Information Criterion |
AIC.logLik | AIC of a logLik Object |
AIC.nlme | Akaike Information Criterion |
AIC.nls | Akaike Information Criterion |
AIC.nlsList | Akaike Information Criterion |
allCoef | Extract Coefficients from a Set of Objects |
anova.gls | Compare Likelihoods of Fitted Objects |
anova.lme | Compare Likelihoods of Fitted Objects |
as.matrix.corStruct | Matrix of a corStruct Object |
as.matrix.pdMat | Matrix of a pdMat Object |
as.matrix.reStruct | Matrices of an reStruct Object |
asOneFormula | Combine Formulas of a Set of Objects |
asOneSidedFormula | Convert to One-Sided Formula |
augPred | Augmented Predictions |
augPred.gls | Augmented Predictions |
augPred.lme | Augmented Predictions |
augPred.lmList | Augmented Predictions |
BIC | Bayesian Information Criterion |
BIC.gls | Bayesian Information Criterion |
BIC.lm | Bayesian Information Criterion |
BIC.lme | Bayesian Information Criterion |
BIC.lmList | Bayesian Information Criterion |
BIC.logLik | BIC of a logLik Object |
BIC.nlme | Bayesian Information Criterion |
BIC.nls | Bayesian Information Criterion |
BIC.nlsList | Bayesian Information Criterion |
coef<- | Assign Values to Coefficients |
coef.corAR1 | Coefficients of a corStruct Object |
coef<-.corAR1 | Coefficients of a corStruct Object |
coef.corARMAd | Coefficients of a corStruct Object |
coef<-.corARMAd | Coefficients of a corStruct Object |
coef.corCAR1 | Coefficients of a corStruct Object |
coef<-.corCAR1 | Coefficients of a corStruct Object |
coef.corCompSymm | Coefficients of a corStruct Object |
coef<-.corCompSymm | Coefficients of a corStruct Object |
coef.corHF | Coefficients of a corStruct Object |
coef<-.corHF | Coefficients of a corStruct Object |
coef.corIdent | Coefficients of a corStruct Object |
coef<-.corIdent | Coefficients of a corStruct Object |
coef.corLin | Coefficients of a corStruct Object |
coef<-.corLin | Coefficients of a corStruct Object |
coef.corSpatial | Coefficients of a corStruct Object |
coef<-.corSpatial | Coefficients of a corStruct Object |
coef.corSpher | Coefficients of a corStruct Object |
coef<-.corSpher | Coefficients of a corStruct Object |
coef.corStruct | Coefficients of a corStruct Object |
coef<-.corStruct | Coefficients of a corStruct Object |
coef.corSymm | Coefficients of a corStruct Object |
coef<-.corSymm | Coefficients of a corStruct Object |
coef.gls | Extract gls Coefficients |
coef.lme | Extract lme Coefficients |
coef.lmList | Extract lmList Coefficients |
coef.modelStruct | Extract modelStruct Object Coefficients |
coef<-.modelStruct | Extract modelStruct Object Coefficients |
coef.pdBlocked | pdMat Object Coefficients |
coef<-.pdBlocked | pdMat Object Coefficients |
coef.pdCompSymm | pdCompSymm Object Coefficients |
coef.pdDiag | pdIdent Object Coefficients |
coef.pdDiag | pdIdent Object Coefficients |
coef.pdIdent | pdIdent Object Coefficients |
coef.pdMat | pdMat Object Coefficients |
coef<-.pdMat | pdMat Object Coefficients |
coef.pdNatural | pdMat Object Coefficients |
coef.pdSymm | pdMat Object Coefficients |
coef.reStruct | reStruct Object Coefficients |
coef<-.reStruct | reStruct Object Coefficients |
coef.varComb | varFunc Object Coefficients |
coef<-.varComb | varFunc Object Coefficients |
coef.varConstPower | varFunc Object Coefficients |
coef<-.varConstPower | varFunc Object Coefficients |
coef.varExp | varFunc Object Coefficients |
coef<-.varExp | varFunc Object Coefficients |
coef.varFixed | varFunc Object Coefficients |
coef<-.varFixed | varFunc Object Coefficients |
coef.varFunc | varFunc Object Coefficients |
coef.varIdent | varFunc Object Coefficients |
coef<-.varIdent | varFunc Object Coefficients |
coef.varPower | varFunc Object Coefficients |
coef<-.varPower | varFunc Object Coefficients |
collapse | Collapse According to Groups |
collapse.groupedData | Collapse a groupedData Object |
compareFits | Compare Fitted Objects |
comparePred | Compare Predictions |
comparePred.gls | Compare Predictions |
comparePred.lme | Compare Predictions |
comparePred.lmList | Compare Predictions |
corAR1 | AR(1) Correlation Structure |
corARMA | ARMA(p,q) Correlation Structure |
corCAR1 | Continuous AR(1) Correlation Structure |
corClasses | Correlation Structure Classes |
corCompSymm | Compound Symmetry Correlation Structure |
corExp | Exponential Correlation Structure |
corFactor | Factor of a Correlation Matrix |
corFactor.compSymm | Factor of a corStruct Object Matrix |
corFactor.corAR1 | Factor of a corStruct Object Matrix |
corFactor.corARMA | Factor of a corStruct Object Matrix |
corFactor.corCAR1 | Factor of a corStruct Object Matrix |
corFactor.corHF | Factor of a corStruct Object Matrix |
corFactor.corSpatial | Factor of a corStruct Object Matrix |
corFactor.corStruct | Factor of a corStruct Object Matrix |
corFactor.corSymm | Factor of a corStruct Object Matrix |
corGaus | Gaussian Correlation Structure |
corHF | Huyn-Feldt Correlation Structure |
corLin | Linear Correlation Structure |
corMatrix | Extract Correlation Matrix |
corMatrix.compSymm | Matrix of a corStruct Object |
corMatrix.corAR1 | Matrix of a corStruct Object |
corMatrix.corARMA | Matrix of a corStruct Object |
corMatrix.corCAR1 | Matrix of a corStruct Object |
corMatrix.corHF | Matrix of a corStruct Object |
corMatrix.corSpatial | Matrix of a corStruct Object |
corMatrix.corStruct | Matrix of a corStruct Object |
corMatrix.corSymm | Matrix of a corStruct Object |
corMatrix.pdBlocked | Extract Correlation Matrix from a pdMat Object |
corMatrix.pdCompSymm | Extract Correlation Matrix from a pdMat Object |
corMatrix.pdDiag | Extract Correlation Matrix from a pdMat Object |
corMatrix.pdIdent | Extract Correlation Matrix from a pdMat Object |
corMatrix.pdMat | Extract Correlation Matrix from a pdMat Object |
corMatrix.pdSymm | Extract Correlation Matrix from a pdMat Object |
corMatrix.reStruct | Extract Correlation Matrix from Components of an reStruct Object |
corSpatial | Spatial Correlation Structure |
corSpher | Spherical Correlation Structure |
corSymm | General Correlation Structure |
covariate<- | Assign Covariate Values |
covariate<-.varFunc | Assign varFunc Covariate |
Dim | Extract Dimensions from an Object |
Dim.corSpatial | Dimensions of a corSpatial Object |
Dim.corStruct | Dimensions of a corStruct Object |
Dim.pdCompSymm | Dimensions of a pdMat Object |
Dim.pdDiag | Dimensions of a pdMat Object |
Dim.pdIdent | Dimensions of a pdMat Object |
Dim.pdMat | Dimensions of a pdMat Object |
fitted.gls | Extract gls Fitted Values |
fitted.glsStruct | Calculate glsStruct Residuals |
fitted.glsStruct | Calculate glsStruct Residuals |
fitted.lme | Extract lme Fitted Values |
fitted.lmeStruct | Calculate lmeStruct Fitted Values |
fitted.lmList | Extract lmList Fitted Values |
fixed.effects | Extract Fixed Effects |
fixed.effects.lme | Extract lme Fixed Effects |
fixed.effects.lmList | Extract lmList Fixed Effects |
fixef | Extract Fixed Effects |
fixef.lme | Extract lme Fixed Effects |
fixef.lmList | Extract lmList Fixed Effects |
formula.corStruct | Extract corStruct Object Formula |
formula.gls | Extract gls Object Formula |
formula.groupedData | Extract groupedData Formula |
formula.lme | Extract lme Object Formula |
formula.lmList | Extract lmList Object Formula |
formula.modelStruct | Extract Formula from \code{modelStruct |
formula.nls | Extract Model Formula from nls Object |
formula.pdBlocked | Extract pdBlocked Formula |
formula.pdMat | Extract pdMat Formula |
formula.reStruct | Extract reStruct Object Formula |
formula.varComb | Extract varFunc Formula |
formula.varFunc | Extract varFunc Formula |
gapply | Apply a Function by Groups |
getCovariate | Extract Covariate from an Object |
getCovariate.corSpatial | Extract corStruct Object Covariate |
getCovariate.corStruct | Extract corStruct Object Covariate |
getCovariate.data.frame | Extract Data Frame Covariate |
getCovariateFormula | Extract Covariates Formula |
getCovariate.varFunc | Extract varFunc Covariate |
getGroups | Extract Grouping Factors from an Object |
getGroups.corStruct | Extract corStruct Groups |
getGroups.data.frame | Extract Groups from a Data Frame |
getGroupsFormula | Extract Grouping Formula |
getGroupsFormula.default | Extract Grouping Formula |
getGroupsFormula.gls | Extract gls Object Grouping Formula |
getGroupsFormula.lme | Extract lme Object Grouping Formula |
getGroupsFormula.lmList | Extract lmList Object Grouping Formula |
getGroupsFormula.reStruct | Extract reStruct Grouping Formula |
getGroups.gls | Extract gls Object Groups |
getGroups.lme | Extract lme Object Groups |
getGroups.lmList | Extract lmList Object Groups |
getGroups.varFunc | Extract varFunc Groups |
getResponse | Extract Response Variable from an Object |
getResponse.data.frame | Extract Response from a Data Frame |
getResponseFormula | Extract Formula Specifying Response Variable |
getResponse.gls | Extract gls Object Response |
getResponse.lme | Extract lme Object Response |
getResponse.lmList | Extract lmList Object Response |
gls | Fit Linear Model Using Generalized Least Squares |
glsControl | Control Values for gls Fit |
glsObject | Fitted gls Object |
glsStruct | Generalized Least Squares Structure |
groupedData | Construct a groupedData Object |
gsummary | Summarize by Groups |
initialize | Initialize Object |
initialize.corAR1 | Initialize corStruct Object |
initialize.corARMA | Initialize corStruct Object |
initialize.corCAR1 | Initialize corStruct Object |
initialize.corCompSymm | Initialize corStruct Object |
initialize.corHF | Initialize corStruct Object |
initialize.corIdent | Initialize corStruct Object |
initialize.corLin | Initialize corStruct Object |
initialize.corSpatial | Initialize corStruct Object |
initialize.corSpher | Initialize corStruct Object |
initialize.corStruct | Initialize corStruct Object |
initialize.corSymm | Initialize corStruct Object |
initialize.glsStruct | Initialize a glsStruct Object |
initialize.lmeStruct | Initialize an lmeStruct Object |
initialize.reStruct | Initialize reStruct Object |
initialize.varComb | Initialize varFunc Object |
initialize.varConstPower | Initialize varFunc Object |
initialize.varExp | Initialize varFunc Object |
initialize.varFixed | Initialize varFunc Object |
initialize.varFunc | Initialize varFunc Object |
initialize.varIdent | Initialize varFunc Object |
initialize.varPower | Initialize varFunc Object |
intervals | Confidence Intervals on Coefficients |
intervals.gls | Confidence Intervals on gls Parameters |
intervals.lme | Confidence Intervals on lme Parameters |
intervals.lmList | Confidence Intervals on lmList Coefficients |
isInitialized | Check if Object is Initialized |
isInitialized.pdBlocked | Check if Object is Initialized |
isInitialized.pdMat | Check if Object is Initialized |
isInitialized.reStruct | Check if an reStruct Object is Initialized |
isInitialized.reStruct | Check if an reStruct Object is Initialized |
lme | Linear Mixed-Effects Models |
lmeControl | Control Values for lme Fit |
lme.formula | Linear Mixed-Effects Models |
lme.groupedData | LME fit from groupedData Object |
lme.lmList | LME fit from lmList Object |
lmeObject | Fitted lme Object |
lmeScale | Scale for lme Optimization |
lmeStruct | Linear Mixed-Effects Structure |
lmList | List of lm Objects with a Common Model |
lmList.formula | List of lm Objects with a Common Model |
lmList.groupedData | lmList Fit from a groupedData Object |
logDet | Extract the Logarithm of the Determinant |
logDet.corStruct | Extract corStruct Log-Determinant |
logDet.pdBlocked | Extract Log-Determinant from a pdMat Object |
logDet.pdCompSymm | Extract Log-Determinant from a pdMat Object |
logDet.pdDiag | Extract Log-Determinant from a pdMat Object |
logDet.pdIdent | Extract Log-Determinant from a pdMat Object |
logDet.pdMat | Extract Log-Determinant from a pdMat Object |
logDet.pdSymm | Extract Log-Determinant from a pdMat Object |
logDet.reStruct | Extract reStruct Log-Determinants |
logLik | Extract Log-Likelihood |
logLik.corStruct | Extract corStruct Log-Likelihood |
logLik.gls | Log-Likelihood of a gls Object |
logLik.glsStruct | Log-Likelihood of a glsStruct Object |
logLik.lm | Extract Log-Likelihood from an lm Object |
logLik.lme | Log-Likelihood of an lme Object |
logLik.lmeStruct | Log-Likelihood of an lmeStruct Object |
logLik.lmeStructInt | Log-Likelihood of an lmeStruct Object |
logLik.lmList | Log-Likelihood of an lmList Object |
logLik.reStruct | Calculate reStruct Log-Likelihood |
logLik.varComb | Extract varFunc logLik |
logLik.varFunc | Extract varFunc logLik |
matrix<- | Assign Matrix Values |
matrix<-.pdBlocked | Assign Matrix to a pdMat Object |
matrix<-.pdMat | Assign Matrix to a pdMat Object |
matrix<-.reStruct | Assign reStruct Matrices |
model.matrix.reStruct | reStruct Model Matrix |
Names | Names Associated with an Object |
Names<- | Names Associated with an Object |
Names.formula | Extract Names from a formula |
Names.pdBlocked | Names of a pdBlocked Object |
Names.pdMat | Names of a pdMat Object |
Names<-.pdMat | Names of a pdMat Object |
Names.reStruct | Names of an reStruct Object |
Names<-.reStruct | Names of an reStruct Object |
needUpdate | Check if Update is Needed |
needUpdate.default | Check if Update is Needed |
needUpdate.modelStruct | Check if \code{modelStruct |
needUpdate.varComb | Check if Update is Needed |
needUpdate.varIdent | Check if Update is Needed |
pairs.compareFits | Pairs Plot of compareFits Object |
pairs.lme | Pairs Plot of an lme Object |
pairs.lmList | Pairs Plot of an lmList Object |
pdBlocked | Positive-Definite Block Diagonal Matrix |
pdClasses | Positive-Definite Matrix Classes |
pdCompSymm | Positive-Definite Matrix with Compound Symmetry Structure |
pdConstruct | Construct pdMat Objects |
pdConstruct.pdBlocked | Construct pdBlocked Objects |
pdConstruct.pdCompSymm | Construct pdMat Objects |
pdConstruct.pdDiag | Construct pdMat Objects |
pdConstruct.pdIdent | Construct pdMat Objects |
pdConstruct.pdMat | Construct pdMat Objects |
pdConstruct.pdNatural | Construct pdMat Objects |
pdConstruct.pdSymm | Construct pdMat Objects |
pdDiag | Diagonal Positive-Definite Matrix |
pdFactor | Square-Root Factor of a Positive-Definite Matrix |
pdFactor.pdBlocked | Square-Root Factor of a Positive-Definite Matrix |
pdFactor.pdCompSymm | Square-Root Factor of a Positive-Definite Matrix |
pdFactor.pdDiag | Square-Root Factor of a Positive-Definite Matrix |
pdFactor.pdIdent | Square-Root Factor of a Positive-Definite Matrix |
pdFactor.pdMat | Square-Root Factor of a Positive-Definite Matrix |
pdFactor.pdNatural | Square-Root Factor of a Positive-Definite Matrix |
pdFactor.reStruct | Extract Square-Root Factor from Components of an reStruct Object |
pdIdent | Multiple of the Identity Positive-Definite Matrix |
pdMat | Positive-Definite Matrix |
pdMatrix | Extract Matrix or Square-Root Factor from a pdMat Object |
pdMatrix.pdBlocked | Extract Matrix or Square-Root Factor from a pdMat Object |
pdMatrix.pdCompSymm | Extract Matrix or Square-Root Factor from a pdMat Object |
pdMatrix.pdDiag | Extract Matrix or Square-Root Factor from a pdMat Object |
pdMatrix.pdIdent | Extract Matrix or Square-Root Factor from a pdMat Object |
pdMatrix.pdMat | Extract Matrix or Square-Root Factor from a pdMat Object |
pdMatrix.pdSymm | Extract Matrix or Square-Root Factor from a pdMat Object |
pdMatrix.reStruct | Extract Matrix or Square-Root Factor from Components of an reStruct Object |
pdNatural | General Positive-Definite Matrix in Natural Parametrization |
pdSymm | General Positive-Definite Matrix |
plot.augPred | Plot augPred Object |
plot.compareFits | Plot a compareFits Object |
plot.gls | Plot a gls Object |
plot.intervals.lmList | Plot lmList Confidence Intervals |
plot.lme | Plot an lme Object |
plot.lmList | Plot an lmList Object |
plot.nffGroupedData | Plot an nffGroupedData Object |
plot.nfnGroupedData | Plot an nfnGroupedData Object |
plot.nmGroupedData | Plot an nmGroupedData Object |
plot.random.effects.lme | Plot a random.effects.lme Object |
plot.random.effects.lmList | Plot a random.effects.lmList Object |
pooledSD | Extract Pooled Standard Deviation |
predict.gls | Predictions from a gls Object |
predict.lme | Predictions from an lme Object |
predict.lmList | Predictions from an lmList Object |
print.anova.lme | Print an anova.lme Object |
print.corHF | Print a corStruct Object |
print.corStruct | Print a corStruct Object |
print.corSymm | Print a corStruct Object |
print.gls | Print a gls Object |
print.groupedData | Print a groupedData Object |
print.intervals.gls | Print an intervals.gls Object |
print.intervals.lme | Print an intervals.lme Object |
print.intervals.lme | Print an intervals.lme Object |
print.lme | Print an lme Object |
print.lmList | Print an lmList Object |
print.modelStruct | Use \code{print |
print.pdMat | Print a pdMat Object |
print.reStruct | Print an reStruct Object |
print.summary.corStruct | Print a summary.corStruct Object |
print.summary.gls | Print a summary.gls Object |
print.summary.lme | Print a summary.lme Object |
print.summary.lmList | Print a summary.lmList Object |
print.summary.modelStruct | Use \code{print |
print.summary.pdMat | Print a summary.pdMat Object |
print.summary.varComb | Print a summary.varFunc Object |
print.summary.varFixed | Print a summary.varFunc Object |
print.summary.varFunc | Print a summary.varFunc Object |
print.varComb | Print a varFunc Object |
print.varFunc | Print a varFunc Object |
pruneLevels | Prune Factor Levels |
pruneLevels.factor | Prune Factor Levels |
pruneLevels.ordered | Prune Factor Levels |
random.effects | Extract Random Effects |
random.effects.lme | Extract lme Random Effects |
random.effects.lmList | Extract lmList Random Effects |
ranef | Extract Random Effects |
ranef.lme | Extract lme Random Effects |
ranef.lmList | Extract lmList Random Effects |
recalc | Recalculate Condensed Linear Model Object |
recalc.corAR1 | Recalculate for corStruct Object |
recalc.corARMA | Recalculate for corStruct Object |
recalc.corCAR1 | Recalculate for corStruct Object |
recalc.corCompSymm | Recalculate for corStruct Object |
recalc.corHF | Recalculate for corStruct Object |
recalc.corIdent | Recalculate for corStruct Object |
recalc.corSpatial | Recalculate for corStruct Object |
recalc.corStruct | Recalculate for corStruct Object |
recalc.corSymm | Recalculate for corStruct Object |
recalc.modelStruct | Recalculate Condensed Linear Model for a \code{modelStruct |
recalc.reStruct | Recalculate for an reStruct Object |
recalc.varFunc | Recalculate for varFunc Object |
residuals.gls | Extract gls Residuals |
residuals.glsStruct | Calculate glsStruct Residuals |
residuals.lme | Extract lme Residuals |
residuals.lmeStruct | Calculate lmeStruct Residuals |
residuals.lmList | Extract lmList Residuals |
reStruct | Random Effects Structure |
solve.pdBlocked | Calculate Inverse of a Positive-Definite Matrix |
solve.pdDiag | Calculate Inverse of a Positive-Definite Matrix |
solve.pdIdent | Calculate Inverse of a Positive-Definite Matrix |
solve.pdMat | Calculate Inverse of a Positive-Definite Matrix |
solve.pdNatural | Calculate Inverse of a Positive-Definite Matrix |
solve.reStruct | Apply Solve to an reStruct Object |
splitFormula | Split a Formula |
summary.corAR1 | Summarize \code{corStruct |
summary.corARMA | Summarize \code{corStruct |
summary.corCAR1 | Summarize \code{corStruct |
summary.corCompSymm | Summarize \code{corStruct |
summary.corExp | Summarize \code{corStruct |
summary.corGaus | Summarize \code{corStruct |
summary.corHF | Summarize \code{corStruct |
summary.corIdent | Summarize \code{corStruct |
summary.corLin | Summarize \code{corStruct |
summary.corSpher | Summarize \code{corStruct |
summary.corStruct | Summarize \code{corStruct |
summary.corSymm | Summarize \code{corStruct |
summary.gls | Summarize a gls Object |
summary.lme | Summarize an lme Object |
summary.lmList | Summarize an lmList Object |
summary.modelStruct | Summarize \code{modelStruct |
summary.pdBlocked | Summarize a pdMat Object |
summary.pdCompSymm | Summarize a pdMat Object |
summary.pdDiag | Summarize a pdMat Object |
summary.pdIdent | Summarize a pdMat Object |
summary.pdMat | Summarize a pdMat Object |
summary.pdNatural | Summarize a pdMat Object |
summary.varComb | Summarize varFunc Object |
summary.varConstPower | Summarize varFunc Object |
summary.varExp | Summarize varFunc Object |
summary.varFixed | Summarize varFunc Object |
summary.varFunc | Summarize varFunc Object |
summary.varIdent | Summarize varFunc Object |
summary.varPower | Summarize varFunc Object |
update.gls | Update a gls Object |
update.groupedData | Update a groupedData Object |
update.lme | Update an lme Object |
update.lmList | Update an lmList Object |
update.modelStruct | Update Elements of \code{modelStruct |
update.varComb | Update varFunc Object |
update.varConstPower | Update varFunc Object |
update.varExpon | Update varFunc Object |
update.varFunc | Update varFunc Object |
update.varPower | Update varFunc Object |
varClasses | Variance Function Classes |
varComb | Combination of Variance Functions |
varConstPower | Constant Plus Power Variance Function |
varExp | Exponential Variance Function |
varExpon | Exponential Variance Function |
varFixed | Fixed Variance Function |
varFunc | Variance Function Structure |
varIdent | Constant Variance Function |
varPower | Power Variance Function |
varWeights | Extract Variance Function Weights |
varWeights.glsStruct | Variance Weights for glsStruct Object |
varWeights.lmeStruct | Variance Weights for lmeStruct Object |
varWeights.varComb | Extract Variance Function Weights |
varWeights.varFunc | Extract Variance Function Weights |