Member Function
Score
Constructor
Score(const & other)
Score(distance, gap [, gap_open])
Parameters
distance
desired evolutionary distance (int).
Default: 250
gap
desired penalty for gap (extension).
Default: -1
gap_open
desired penalty for gap opening.
Default: gap
other
Score to be copied
If both gap and gap_open are specified, the total score of a length n gap is gap_open + (n-1)*gap.
Note: Usually gap, gap_extend, and gap_open are negative values.
Member of
SeqAn - Sequence Analysis Library - www.seqan.de